• Skip to main content
  • Skip to footer
Deep Roots at Home
  • Home
  • About
  • Podcast
  • Shop
  • Blog
    • Alternative Medicine
    • Babies & Pregnancy
    • Beauty
    • Books & Booklists
    • Brain & Gut Health
    • Children At Home
    • COVID-19
    • Detoxing & TRS
    • DIY & Crafts
    • Education & Homeschool
    • Faith & Family
    • Feel-Good Stories
    • Flourishing Marriage
    • Flourishing Womanhood
    • Food & Recipes
    • Food Additives
    • Garden & Homestead
    • Healthy Living
    • Herbs & Remedies
    • Holidays
    • Homemaking
    • My Favorite Products
    • News & Alerts
    • Parental Rights
    • Pharma & Vaccines
    • Play, Toys, & Movies
    • Raising Daughters
    • Raising Sons

Methylene Blue and Your Gut Microbiome: What You Should Know

3.6KViews Modified: Sep 16, 2025 · Published: May 12, 2025
By Jacqueline 2 Comments

Methylene Blue and Your Gut Microbiome: What You Should Know

Methylene Blue (MB) is the parent molecule for hydroxychloroquine, the off-patent drug commonly used to treat not only malaria but also The Spanish Flu of 1918. Until antibiotics came along, it was commonly used to treat urinary tract infections (which still works, btw) at low doses mentioned below. It’s also used as an antiviral agent in blood transfusions.

Biohackers found numerous and “profound health benefits since Methylene Blue acts as an electron donor, improving the electron transport chain at the cellular level. This means more ATP production by your mitochondria, which is how your body creates energy at the most foundational level.”

It’s also understood that MB shares functional similarities with hemoglobin—the vital protein in blood cells that carries oxygen throughout the body. Its ability to mimic hemoglobin’s oxygen-transporting role enables methylene blue to effectively treat a range of medical issues.

It has proven effective for conditions like sepsis, epilepsy, and stroke management, and ongoing research is uncovering even more benefits, including managing diabetes and difficult skin conditions. (source)

Many people began to use Methylene Blue (MB) for protection from COVID and the COVID Vaxx toxins that are shed. Others use it because it is scientifically proven to be neuroprotective and help restore/reset brain function in people with Alzheimer’s, Parkinson’s, bipolar, depression and more.

Methylene blue shows promise in treating Alzheimer’s by reducing toxic protein buildup in the brain, including amyloid plaques and tau tangles, which are key contributors to the disease. This may slow or halt its progression. (source)

Some people, however, expressed a concern that Methylene Blue (MB) might disrupt the gut microbiome.

Methylene Blue and the Gut Microbiome

In this video, Dr. Dane Newville, a pharmacist at MD Custom Rx, discusses the effects of MB on the gut microbiome and how you can use it to improve your health. 13 minutes.

This study exposed mice to 15mg of Methylene Blue per day and studied the effect on the gut microbiome. Note that 15 mg is much higher than what most people would take. The results showed a very small change in the gut microbiome– perhaps a 1% change.

The conclusion of this study is that MB, being an anti-microbial, will attack all forms of bacteria– including the good bacteria. However, even at a very high dose, it does not alter the gut microbiome to any serious degree.

If one wants to go deeper, David Tomen, author of Nootropics Expert, discusses mechanisms behind Methylene Blue and some of the medical uses for this powerful agent. He also shares research on the dosing and other nuanced precautions for patients considering using Methylene Blue. 23 minutes.

Very low dose Methylene Blue (1%) supplementation (0.5 mg to 1 mg/kg of body weight/day) provides many life-enhancing effects, while (as with many things), high doses are harmful.

With MB, less is more.

REMEMBER: Very low dose Methylene Blue (1%) supplementation (which is 0.5 mg/kg of body weight/day) provides many life-enhancing effects, while very high doses (2 mg/kg. and above) are harmful. To get good effects, you can take a fraction of the recommended low levels (below) and still get good effects. I always recommend talking with your functional doctor.

Make sure to get it from a trusted source. This 1% product is 0.5 mg per drop and is batch tested for purity.

Note: Methylene Blue 1% has been SOLD OUT on Amazon and other sites off and on for quite a while. I made a way to get my readers 10% off using this special link directly from Compass Laboratory: Methylene Blue (1%) USP grade. Use the coupon code: Deeprootsathome

This dosing chart below is only for reference of what is in the safe range. But truly, most can get the wonderful effects with only a tenth (1/10th) of what is listed below like we have, save money, and slowly titrate up as needed.

DOSING FOR METHYLENE BLUE 1% SOLUTION

Body Weight: 50 kg/110 lbs:  0.5 mg/kg dose = 25 mg/day or 50 drops/day

Body Weight: 55 kg/121 lbs:  0.5 mg/kg dose = 27.5 mg/day or 55 dr/day

Body Weight: 60 kg/132 lbs:  0.5 mg/kg dose = 30 mg/day or 60 drops/day

Body Weight: 65 kg/143 lbs:  0.5 mg/kg dose = 32.5 mg/day or 65 dr/day

Body Weight: 70 kg/154 lbs:  0.5 mg/kg dose = 35 mg/day or 70 drops/day

Body Weight: 75 kg/165 lbs:  0.5 mg/kg dose = 37.5 mg/day or 75 dr/day

Body Weight: 80 kg/176 lbs:  0.5 mg/kg dose = 40 mg/day or 80 drops

Body Weight: 85 kg/187 lbs:  0.5 mg/kg dose = 42.5 mg/day or 85 dr/day

Body Weight: 90 kg/198 lbs:  0.5 mg/kg dose = 45 mg/day or 90 drops/day

Body Weight: 95 kg/209 lbs:  0.5 mg/kg dose = 47.5 mg/day or 95 dr/day

Tips To Make It and NOT Stain Your Mouth Blue.

(Jacqueline’s note: My husband and I have taken MB for quite some time for the cognitive benefits and for its calming effect. We take 10 drops of this Methylene Blue (1%) both AM and PM. We add the drops into 1-2″ of lemon water (and add 1,000 -2,000 mgs. of buffered sodium ascorbate powder, to neutralize the color) and wait a few minutes till the blue color lessens dramatically. Our VERY LOW dose is a total of 20 drops/day which equals 10 mg/day. I use a straw, swish with pure water afterward and have not ever stained my teeth. Urine will be blue-green-tinged, and observing that is helpful to tell you when your levels are low again. The half-life is 12-13 hours.)

Contraindications:

Do not use Methylene Blue if you have a G6PD deficiency, an advanced liver or kidney disorder, if you regularly use 5-HTP or St. John’s Wort.

Side effects with MB are very rare when doses are under 2 mg/kg.

Monoamine Oxidase (MAOI) inhibition becomes a big problem over 2 mg/kg of MB. So if you are using antidepressants or anti-anxiety medications that affect dopamine or serotonin, you should NOT use Methylene Blue over 2 mg./kg.

NO MB during pregnancy or while nursing.

Note: In the video above, at 1:33:30, Mayo Clinic said there is “NO contraindication for oral MB with SSRIs”. 

Follow directions closely or find and consult a functional doctor before use. 

Methylene Blue is also being increasingly used for cancer:

“Methylene Blue could be used to “eliminate microscopic malignant cells in the post-surgical tumor bed and prevent local as well as metastatic recurrence without affecting normal tissues.” (source) ~Alberta, Canada oncologist Dr. William Makis. He has 8 articles on MB for 8 different CANCERS: breast, ovarian, lung, glioblastoma, pancreatic, squamous cell, cervical, colon, and prostate.

“Lean not on your own understanding. In all your ways acknowledge HIM, and HE WILL direct your path.” ~Proverbs 3:5-6

***If you found value in this writing, please share it, discuss it, and subscribe to my FREE newsletter. Independent, totally ad-free work like this spreads because of readers like you.

Also, please consider supporting my work by using my Amazon affiliate link when purchasing from there.

Help For Kids' ADHD, Dyspraxia, or Dyslexia Without Drugs? Yes!, printable or PDF

Censorship is real, so my Pinterest account was suspended; thankfully, a big part of my main board is still alive through this link!

You can also find me on Facebook, Gab, MeWe, X (Twitter), and Instagram.

****For the Full Spike Protein Protocol to protect from transmission from the “V” and to help those who took the “V”, go here.

Medical Disclaimer: I am no longer a practicing medical professional, and I am not doctor. I am a mother. I do seek scientific confirmation of the safety and effectiveness of the herbs and remedies I use. Using remedies is a personal decision. Nothing I say on this blog is intended to treat or prevent disease. Consult your own doctor.

©2026 Deep Roots at Home • All Rights Reserved

Print Friendly, PDF & Email
« Don’t Put Your Child To Sleep with Benadryl: Try This Instead
Who Are Casey & Calley Means & the Powers Behind Them? »

Related

Hi! I’m Jacqueline!

Thanks for being part of this journey with me.
Welcome to my own little place on the internet! Home is where I love to be. I feel there is no greater place to incubate souls. These days you’ll find me using my experiences here to write about herbal remedies and natural health research — a big passion of mine. But being a wife and mother is not easy. It is challenging and potentially lonely. I get that. I wanted to create a place to connect with and support other moms for creating a natural, healthy, and fulfilling home life.
Join the newsletter:

Sent in accordance with our Privacy Policy.

Get new posts texted directly to your phone:

Footer

About Deep Roots at Home

What is Deep Roots at Home?
Jacqueline’s Story
Article Archives
Contact
Stay Updated

Weekly updates on the topics that matter the most to you!

Sent in accordance with our Privacy Policy.

Get Phone Texting Updates

Popular Posts This Week
  • Medical Care For Pets (and Humans) When There Is No Doctor
  • Dr. Bryan Ardis: Reversing Just About Any Disease with Nicotine
  • DMSO Could Help Millions With Brain and Spinal Injury, Arthritis
  • The Link Between Statins, Diabetes type 2 & Cognitive Decline

Affiliate Disclosure  •  Medical Disclosure  •  Privacy Policy  •  Cookie Policy

The information on this website has not been evaluated by the FDA and is not intended to diagnose, treat, prevent, or cure any disease. By accessing or using this website, you agree to abide by the Terms of Service, Full Disclaimer, Privacy Policy, Affiliate Disclosure, and Comment Policy. Content may not be reproduced in any form. Website by Imperative Co.


© 2006–2026 Deep Roots at Home • All Rights Reserved

Manage Consent
To provide the best experiences, we use technologies like cookies to store and/or access device information. Consenting to these technologies will allow us to process data such as browsing behavior or unique IDs on this site. Not consenting or withdrawing consent, may adversely affect certain features and functions.
Functional Always active
The technical storage or access is strictly necessary for the legitimate purpose of enabling the use of a specific service explicitly requested by the subscriber or user, or for the sole purpose of carrying out the transmission of a communication over an electronic communications network.
Preferences
The technical storage or access is necessary for the legitimate purpose of storing preferences that are not requested by the subscriber or user.
Statistics
The technical storage or access that is used exclusively for statistical purposes. The technical storage or access that is used exclusively for anonymous statistical purposes. Without a subpoena, voluntary compliance on the part of your Internet Service Provider, or additional records from a third party, information stored or retrieved for this purpose alone cannot usually be used to identify you.
Marketing
The technical storage or access is required to create user profiles to send advertising, or to track the user on a website or across several websites for similar marketing purposes.
  • Manage options
  • Manage services
  • Manage {vendor_count} vendors
  • Read more about these purposes
View preferences
  • {title}
  • {title}
  • {title}

Get New Posts Texted Directly to Your Phone!

Get New Posts Texted Directly to Your Phone!

Get your free printable guide!

Fill in your email address to receive the free “5 Easy + Healthy Lifestyle Drinks” printable PDF.

Get your free printable guide!

Fill in your email address to receive the free “5 Easy, Homemade Remedies to Beat Coughs & Colds” printable PDF.

Subscribe to Email Updates

By adding your email address below, you agree to receive email updates from Deep Roots at Home. You’ll get 2-6 emails per month with info that we can’t share on social media and important updates. We may send occasional marketing / sales emails.

Get your free printable guide!

Fill in your email address to receive the free “Treasured Old Books” printable guide.

Praying for newlyweds is perhaps the best gift we can give them! Receive this printable PDF: “31 Days of Praying Scripture for Newlyweds.” 

Prayers for Husbands

View our privacy policy.

The PDF will arrive in your inbox! You’ll also get about 1-2 emails a month (including the seasonal freebies!) and can unsubscribe at any time.

Get your free printable guide!

Fill in your email address to receive the free “31 Days of Praying Scripture for Newlyweds” printable guide.

Get your free ebook!

Fill in your email address to receive the free “Vital Vaccine Info” printable e-book.

Get your free printable guide!

Fill in your email address to receive the free “Make Your Own Elderberry Syrup — with Easy Recipes!” printable PDF.

¡Nos gustaría mantener en contacto! Y usted recibirá un obsequio importante de la temporada: “Cerebros Ambrientes y Escasa Atención En Los Niños” PDF imprimible.

Spanish Boys Attention Spans

Ver nuestra política de privacidad.


¡El PDF llegará a su buzón de entrada! ¡Usted recibirá 1 – 2 correos electrónicos al mes (incluyendo los regalos de temporada!) y puede cancelar su suscripción en cualquier momento. 

Get the freebie of the season!

Fill in your email address to receive the free “100 Wholehearted Books to Take Back the Culture” printable guide.

Get the printable ebook!

Fill in your email address to receive the free “Dyslexia Tips” ebook from Sarah J. Brown.

Get your free printable guide!

Fill in your email address to receive the free “Starving Brains & Poor Attention Spans in Boys: 30 Tips for Parents” printable PDF.